User profiles for Michael A. Skinnider

Michael A. Skinnider

Princeton University
Verified email at princeton.edu
Cited by 3031

[HTML][HTML] Comprehensive prediction of secondary metabolite structure and biological activity from microbial genome sequences

MA Skinnider, CW Johnston… - Nature …, 2020 - nature.com
Novel antibiotics are urgently needed to address the looming global crisis of antibiotic
resistance. Historically, the primary source of clinically used antibiotics has been microbial …

[HTML][HTML] Confronting false discoveries in single-cell differential expression

…, AJ Levine, G La Manno, MA Skinnider… - Nature …, 2021 - nature.com
Differential expression analysis in single-cell transcriptomics enables the dissection of cell-type-specific
responses to perturbations such as disease, trauma, or experimental …

Genomes to natural products prediction informatics for secondary metabolomes (PRISM)

MA Skinnider, CA Dejong, PN Rees… - Nucleic acids …, 2015 - academic.oup.com
Microbial natural products are an invaluable source of evolved bioactive small molecules
and pharmaceutical agents. Next-generation and metagenomic sequencing indicates …

PRISM 3: expanded prediction of natural product chemical structures from microbial genomes

MA Skinnider, NJ Merwin, CW Johnston… - Nucleic acids …, 2017 - academic.oup.com
Microbial natural products represent a rich resource of pharmaceutically and industrially
important compounds. Genome sequencing has revealed that the majority of natural products …

[HTML][HTML] The neurons that restore walking after paralysis

C Kathe, MA Skinnider, TH Hutson, N Regazzi… - Nature, 2022 - nature.com
A spinal cord injury interrupts pathways from the brain and brainstem that project to the
lumbar spinal cord, leading to paralysis. Here we show that spatiotemporal epidural electrical …

Genomic charting of ribosomally synthesized natural product chemical space facilitates targeted mining

MA Skinnider, CW Johnston… - Proceedings of the …, 2016 - National Acad Sciences
Microbial natural products are an evolved resource of bioactive small molecules, which form
the foundation of many modern therapeutic regimes. Ribosomally synthesized and …

Polyketide and nonribosomal peptide retro-biosynthesis and global gene cluster matching

…, MR Edwards, PN Rees, MA Skinnider… - Nature chemical …, 2016 - nature.com
Polyketides (PKs) and nonribosomal peptides (NRPs) are profoundly important natural
products, forming the foundations of many therapeutic regimes. Decades of research have …

[HTML][HTML] An automated Genomes-to-Natural Products platform (GNP) for the discovery of modular natural products

CW Johnston, MA Skinnider, MA Wyatt, X Li… - Nature …, 2015 - nature.com
Bacterial natural products are a diverse and valuable group of small molecules, and genome
sequencing indicates that the vast majority remain undiscovered. The prediction of natural …

Evaluating measures of association for single-cell transcriptomics

MA Skinnider, JW Squair, LJ Foster - Nature methods, 2019 - nature.com
Single-cell transcriptomics provides an opportunity to characterize cell-type-specific transcriptional
networks, intercellular signaling pathways and cellular diversity with unprecedented …

Chemical language models enable navigation in sparsely populated chemical space

MA Skinnider, RG Stacey, DS Wishart… - Nature Machine …, 2021 - nature.com
Deep generative models are powerful tools for the exploration of chemical space, enabling
the on-demand generation of molecules with desired physical, chemical or biological …