User profiles for Michael A. Skinnider
Michael A. SkinniderPrinceton University Verified email at princeton.edu Cited by 3031 |
[HTML][HTML] Comprehensive prediction of secondary metabolite structure and biological activity from microbial genome sequences
MA Skinnider, CW Johnston… - Nature …, 2020 - nature.com
Novel antibiotics are urgently needed to address the looming global crisis of antibiotic
resistance. Historically, the primary source of clinically used antibiotics has been microbial …
resistance. Historically, the primary source of clinically used antibiotics has been microbial …
[HTML][HTML] Confronting false discoveries in single-cell differential expression
Differential expression analysis in single-cell transcriptomics enables the dissection of cell-type-specific
responses to perturbations such as disease, trauma, or experimental …
responses to perturbations such as disease, trauma, or experimental …
Genomes to natural products prediction informatics for secondary metabolomes (PRISM)
MA Skinnider, CA Dejong, PN Rees… - Nucleic acids …, 2015 - academic.oup.com
Microbial natural products are an invaluable source of evolved bioactive small molecules
and pharmaceutical agents. Next-generation and metagenomic sequencing indicates …
and pharmaceutical agents. Next-generation and metagenomic sequencing indicates …
PRISM 3: expanded prediction of natural product chemical structures from microbial genomes
Microbial natural products represent a rich resource of pharmaceutically and industrially
important compounds. Genome sequencing has revealed that the majority of natural products …
important compounds. Genome sequencing has revealed that the majority of natural products …
[HTML][HTML] The neurons that restore walking after paralysis
A spinal cord injury interrupts pathways from the brain and brainstem that project to the
lumbar spinal cord, leading to paralysis. Here we show that spatiotemporal epidural electrical …
lumbar spinal cord, leading to paralysis. Here we show that spatiotemporal epidural electrical …
Genomic charting of ribosomally synthesized natural product chemical space facilitates targeted mining
MA Skinnider, CW Johnston… - Proceedings of the …, 2016 - National Acad Sciences
Microbial natural products are an evolved resource of bioactive small molecules, which form
the foundation of many modern therapeutic regimes. Ribosomally synthesized and …
the foundation of many modern therapeutic regimes. Ribosomally synthesized and …
Polyketide and nonribosomal peptide retro-biosynthesis and global gene cluster matching
…, MR Edwards, PN Rees, MA Skinnider… - Nature chemical …, 2016 - nature.com
Polyketides (PKs) and nonribosomal peptides (NRPs) are profoundly important natural
products, forming the foundations of many therapeutic regimes. Decades of research have …
products, forming the foundations of many therapeutic regimes. Decades of research have …
[HTML][HTML] An automated Genomes-to-Natural Products platform (GNP) for the discovery of modular natural products
CW Johnston, MA Skinnider, MA Wyatt, X Li… - Nature …, 2015 - nature.com
Bacterial natural products are a diverse and valuable group of small molecules, and genome
sequencing indicates that the vast majority remain undiscovered. The prediction of natural …
sequencing indicates that the vast majority remain undiscovered. The prediction of natural …
Evaluating measures of association for single-cell transcriptomics
Single-cell transcriptomics provides an opportunity to characterize cell-type-specific transcriptional
networks, intercellular signaling pathways and cellular diversity with unprecedented …
networks, intercellular signaling pathways and cellular diversity with unprecedented …
Chemical language models enable navigation in sparsely populated chemical space
Deep generative models are powerful tools for the exploration of chemical space, enabling
the on-demand generation of molecules with desired physical, chemical or biological …
the on-demand generation of molecules with desired physical, chemical or biological …