[HTML][HTML] Rapid inference of antibiotic resistance and susceptibility by genomic neighbour typing

…, DR MacFadden, T Charalampous, RS Lee… - Nature …, 2020 - nature.com
Surveillance of drug-resistant bacteria is essential for healthcare providers to deliver
effective empirical antibiotic therapy. However, traditional molecular epidemiology does not …

Population genomics of Mycobacterium tuberculosis in the Inuit

RS Lee, N Radomski, JF Proulx… - Proceedings of the …, 2015 - National Acad Sciences
Nunavik, Québec suffers from epidemic tuberculosis (TB), with an incidence 50-fold higher
than the Canadian average. Molecular studies in this region have documented limited …

Genomic epidemiology and antimicrobial resistance of Neisseria gonorrhoeae in New Zealand

RS Lee, T Seemann, H Heffernan… - Journal of …, 2018 - academic.oup.com
Background Antimicrobial-resistant Neisseria gonorrhoeae is a major threat to public health.
No studies to date have examined the genomic epidemiology of gonorrhoea in the Western …

Reemergence and amplification of tuberculosis in the Canadian arctic

RS Lee, N Radomski, JF Proulx, J Manry… - The Journal of …, 2015 - academic.oup.com
Background. Between November 2011 and November 2012, a Canadian village of 933
persons had 50 culture-positive cases of tuberculosis, with 49 sharing the same genotype. …

Previously undetected super-spreading of Mycobacterium tuberculosis revealed by deep sequencing

RS Lee, JF Proulx, F McIntosh, MA Behr, WP Hanage - Elife, 2020 - elifesciences.org
Tuberculosis disproportionately affects the Canadian Inuit. To address this, it is imperative
we understand transmission dynamics in this population. We investigate whether ‘deep’ …

Real-time sequencing of Mycobacterium tuberculosis: are we there yet?

RS Lee, M Pai - Journal of clinical microbiology, 2017 - Am Soc Microbiol
Whole-genome sequencing has taken a leading role in epidemiologic studies of tuberculosis,
but thus far, its real-time clinical utility has been low, in part because of the requirement for …

Chapter 1: Epidemiology of tuberculosis in Canada

A Mounchili, R Perera, RS Lee, H Njoo… - Canadian Journal of …, 2022 - Taylor & Francis
• The overall incidence rate of active tuberculosis (TB) disease in Canada is low and has
remained unchanged in the last 10 years at around 4.6-5.1 individuals per 100,000 population, …

Inadequate Diet Is Associated with Acquiring Mycobacterium tuberculosis Infection in an Inuit Community. A Case–Control Study

GJ Fox, RS Lee, M Lucas, FA Khan… - Annals of the …, 2015 - atsjournals.org
Background: Tuberculosis predominantly affects socioeconomically disadvantaged
communities. The extent to which specific dietary and lifestyle factors contribute to tuberculosis …

The implications of whole-genome sequencing in the control of tuberculosis

RS Lee, MA Behr - Therapeutic advances in infectious …, 2016 - journals.sagepub.com
The availability of whole-genome sequencing (WGS) as a tool for the diagnosis and clinical
management of tuberculosis (TB) offers considerable promise in the fight against this …

The changing landscape of vancomycin-resistant Enterococcus faecium in Australia: a population-level genomic study

RS Lee, A Gonçalves da Silva… - Journal of …, 2018 - academic.oup.com
Background Vancomycin-resistant Enterococcus faecium (VREfm) represent a major source
of nosocomial infection worldwide. In Australia, there has been a recent concerning …